rs36604877 SNP Detail

Summary

• ID
  rs36604877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAAAAAA TAAATAAATA AATTACACCT GCAAAAGATC
  ACTCAGTAGA AAAGAGTAGC TGGGATTGTT ATATTAGAGG GAAGGATATA ACTGAAAGCT
  R
  CACAACTGAA TGTATGTCTG ACGTGAGTGT GGGAGGTAAA AAGTACAAGG GGGTGTATGG
  CTCAGTGGTC AAGCGGTTGC TCAGGATGCA CAAAGGCCCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798738	NES14715548	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36604877					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798738	NES14715548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268122 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1843 bp upstream
Cpgi16309	CpG island 16309	1663 bp distal
Cpgi16310	CpG island 16310	131 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1314 bp downstream
Rr617827	regulatory region 617827	1518 bp distal
Rr617828	regulatory region 617828	1786 bp distal
Rr617829	regulatory region 617829	within coordinates
Rr617830	regulatory region 617830	643 bp proximal
Rr617831	regulatory region 617831	1442 bp proximal
Tssr48056	transcription start site region 48056	303 bp upstream
Tssr48057	transcription start site region 48057	327 bp upstream
Tssr48058	transcription start site region 48058	1096 bp upstream
Tssr48059	transcription start site region 48059	1123 bp upstream
Tssr52694	transcription start site region 52694	1842 bp upstream
Tssr52695	transcription start site region 52695	644 bp downstream
Tssr52696	transcription start site region 52696	1525 bp downstream
Ung	uracil DNA glycosylase	325 bp upstream