rs36604956 SNP Detail

Summary

• ID
  rs36604956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87823390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGGGCT TTTCAAGGCT
  GAGATAAATT TAAACATTCT TAATTGCAAA GTAGGGAAGA ATTTGCATTA ATGAAGTCTA
  TGCTAAATAT TATTCCACTA TAAATTCTAT TTCACTCTAT ATACTAAAAA GACACTTATT
  TTTCTTCCTT AGAAAGCTTC CCTGGCTAAG GTAAGATTTT TTACTAAATC TAAATTATTT
  Y
  AATGTTTATC AAATGTTATG CCAATAGAAA TTATATGTCA ATCAATATGC TAAATGGTGG
  ATTTTTTTTT CTTCCTTAGC AAGCTTCCCT GTTTCAGGTG AGAATTTTTA CTAAATCTAT
  ATTTATAAAA TATTATGCTA ATACAAATCA TATGCCAATC AATATGCTAA GAGGAGGATT
  ATTTTTCTTC CTTAGCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51175036	NES13826348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36604956					SNP	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51175036	NES13826348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87823390 () rs orientation: forward

Symbol	Name	Function Class
Csn1s1	casein alpha s1	within coordinates
Tssr46871	transcription start site region 46871	1466 bp downstream
Tssr46872	transcription start site region 46872	1311 bp downstream
Tssr46873	transcription start site region 46873	501 bp downstream
Tssr46874	transcription start site region 46874	1498 bp upstream
Tssr51606	transcription start site region 51606	1436 bp upstream
Tssr51607	transcription start site region 51607	1275 bp upstream
Tssr51608	transcription start site region 51608	469 bp upstream