rs36605389 SNP Detail

Summary

• ID
  rs36605389
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8996254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGCCT GTGGAGGAAA
  TGCCTGTTCT GCATCCTCGG TATGCTTTAT TCTGTCCTGT CACAAGGAAG ACTCGGCCAG
  GCTGGATTCA CTCCACTGGA GCCTACAACG CTTAACCCTA AAAAAGCAGT TATAAGTGTA
  ACTCAAAGCT CAGGGCATTA ACTCAGGTGC ATCCCTGCTG CAAATTATAC AGCCACTGCC
  S
  AGGACTCCAT AGTGTAACCC CAAGCAGAAC CCTAAGGGTC CCCAAGCATC AGCCCTAGTC
  TCTAACATGG TAGCACTTGT GACAGACCTA CAGAAAAGCT GGAGTCCATC AATGAAGGCA
  AACACCAGCT TTGTGTACAA AGGCTTTGCT CCTTTGTCTG GAACAGAGAA TTAAGAAACA
  CATGTGCGTG GGTGTGCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51571828	NES14613481	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36605389					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51571828	NES14613481	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8996254 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3l	RAN binding protein 3-like	1179 bp upstream
Rr499127	regulatory region 499127	742 bp proximal
Tssr130603	transcription start site region 130603	1159 bp upstream
Tssr130604	transcription start site region 130604	1173 bp upstream
Tssr130605	transcription start site region 130605	1193 bp upstream
Tssr130606	transcription start site region 130606	1226 bp upstream
Tssr130607	transcription start site region 130607	1518 bp upstream
Tssr130608	transcription start site region 130608	1549 bp upstream
Tssr130609	transcription start site region 130609	1619 bp upstream