rs36605523 SNP Detail

Summary

• ID
  rs36605523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87755712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTAAGT CAGTGACCTT
  AGAAAGGACT TTCTGGGCAA TCTCACCCTA AAATAGACTG GGGGAGGGGC TGGAATGAGG
  ATAAACAGGA GGCAGTTTAG GGTTAGAAGT CTGCTAATCG TGGCCGCTTC TGTCCATGAC
  TTCTCATGTC CAGGTCTCTG CCTCAGCCCC AGGAACTGCC TGGGTCCTAG GGAATGCCGA
  Y
  AGGGCAGAAG AGGTGCCTGG GAAAGGTGAC CTGTCATTGC AAGCTGAGAC CAGAGCATGG
  GTCCAGAAGA CCCAGGCCCA CTGGCTCTTG CTCAAGACTG CCCCTCTTTG GTTCCATGGC
  TTCATCACCA GAAGGTGAGT CACAGAGGAA GGCACAGGGT CCTGAGTCAG TCAGGGAAAT
  CCTGACAGCG AGGACTCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575804	NES14668816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36605523					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575804	NES14668816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87755712 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	1255 bp downstream
Rr579559	regulatory region 579559	1390 bp distal
Rr579560	regulatory region 579560	951 bp proximal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29833	transcription start site region 29833	1633 bp downstream
Tssr29834	transcription start site region 29834	1617 bp downstream
Tssr29835	transcription start site region 29835	1551 bp downstream
Tssr29836	transcription start site region 29836	1512 bp downstream
Tssr29837	transcription start site region 29837	1406 bp downstream
Tssr29838	transcription start site region 29838	1338 bp downstream
Tssr29839	transcription start site region 29839	1258 bp downstream
Tssr33958	transcription start site region 33958	1804 bp upstream
Tssr33959	transcription start site region 33959	1604 bp upstream
Tssr33960	transcription start site region 33960	1500 bp upstream
Tssr33961	transcription start site region 33961	700 bp downstream