rs36605587 SNP Detail

Summary

• ID
  rs36605587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGACCACA GTGATTGAGG TTGCCACAAG AGGGCACTCT
  AGCATATCTG GAGATTAGTT GGAGAGGGAT GCAGGATAAG ACACTAGGGG AATTCAAGAG
  R
  GATAAAGGAT GCTAGAGGGC GAGTAGGGGA CAGTTACAGA GAAGATTTTC CTAGAATAAA
  ATTTTCAAAT CTAAAATTCA TGGGAAGGAC TGGAATATCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887443	NES14907467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36605587					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887443	NES14907467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837318 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	within coordinates
Rr644171	regulatory region 644171	60 bp distal
Tssr65386	transcription start site region 65386	782 bp downstream
Tssr65387	transcription start site region 65387	449 bp downstream
Tssr65388	transcription start site region 65388	351 bp downstream
Tssr65389	transcription start site region 65389	297 bp downstream
Tssr65390	transcription start site region 65390	1829 bp upstream
Tssr65391	transcription start site region 65391	1860 bp upstream
Tssr65392	transcription start site region 65392	1882 bp upstream
Tssr71448	transcription start site region 71448	786 bp upstream
Tssr71449	transcription start site region 71449	773 bp upstream
Tssr71450	transcription start site region 71450	761 bp upstream
Tssr71451	transcription start site region 71451	354 bp upstream
Tssr71452	transcription start site region 71452	1873 bp downstream
Tssr71453	transcription start site region 71453	1896 bp downstream
Tssr71454	transcription start site region 71454	1923 bp downstream