rs36606133 SNP Detail

Summary

• ID
  rs36606133
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57174010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGAGCTC AGGCCTGTTC ATCCCAGCAC TGCGAGGACT
  GAAGGAGGGT CACCGTGAAT TGAAAACTAG CCTGGATATC TAATAAGTTC CAGGAGACCC
  K
  GGACTACAGA GCGAGCTCCT GTCTTACAGG AGAAAAACCC ACCTGGCCAC ACTTTGCTGA
  AATCTGCACA CACACACACA CACACACACA CACACACACA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52020744	NES15041791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36606133					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020744	NES15041791	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57174010 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	1064 bp downstream
Rr679625	regulatory region 679625	1272 bp distal
Rr679626	regulatory region 679626	558 bp proximal
Rr679627	regulatory region 679627	1830 bp proximal
Tssr89773	transcription start site region 89773	937 bp upstream
Tssr89774	transcription start site region 89774	909 bp upstream