rs36606581 SNP Detail

Summary

• ID
  rs36606581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77388585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGTGTA GGGCATATGC
  AGCCCAGCCT GTGGACTGAT CTTAATGGAC AGTGGGGGCA TGAGGGATTC TCTCTGCTCC
  CAGGGGCTGC TCAGCATAAG ACCCTGAGCC AGAATGAGAT GTGTACATTT GTCATGTGAC
  ATGAAGCATG GAACACGCTG GCTGTAATAA GTTTGTAAAG TCTGATGGCT CATTCTTCAG
  R
  GTCAGAGAAC CACAGATCTC AGCCACCCCA GACACTGTAG TGCCAGGGAA ATGTTAGTGG
  TCCCCCCAAA AACAGAGAGA AGCCAATCTG ATGCAATTCA CAGCAAGGTC TCTATTCTAT
  CTAAGCTAGC TCGGGCCCCT TAGCTCACCA CTGACATGCA GGACGGTTTT TGGTGGAGAT
  GGGAGCCCCA AATGTCTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50884815	NES14161790	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36606581					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884815	NES14161790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77388585 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itgb2	integrin beta 2			Intron
				Noncoding-Transcript-Variant
Tssr94244	transcription start site region 94244			1835 bp downstream
Tssr94245	transcription start site region 94245			1104 bp upstream
Tssr94246	transcription start site region 94246			1282 bp upstream