rs36606943 SNP Detail

Summary

• ID
  rs36606943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65517430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC GTGATAAAAA ACTGGAAGCA
  R
  TATAAGCATC TGTCTTAGTC AGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50444034	NES13447115	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	A	G	G	G	G		G	G	A	G		G
ss147312023	ENSMUSSNP5442422	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325657192	CHEV_18_65544013	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36606943					SNP	A	A	A	G	A	A	A	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50444034	NES13447115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65517430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			847 bp proximal
Rr539523	regulatory region 539523			1286 bp distal
Tssr151599	transcription start site region 151599			1647 bp downstream
Tssr151600	transcription start site region 151600			1666 bp upstream
Tssr151601	transcription start site region 151601			1696 bp upstream
Tssr153698	transcription start site region 153698			1828 bp upstream