rs3660740 SNP Detail

Summary

• ID
  rs3660740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34612675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTACCTAG CAAAAATTCT CTAAAGATGG ACTACAAAGA
  CAGAGGTGAA GGGGTCAAGT TCCCCGGCCT GGGAGTTAGC AGAAAATATA ATGTATCACA
  R
  AGTAGCAGGC AACTGGCTCA AGAAATATGT AATGGTCTTT ACAGCAATAC TCCTTACTTA
  AGGGCAATCT AAAGGCCAAC AGGAAGAAAT ATCTTGATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5036661	WI_WGS_8_33067866	WI	MOUSE	f	SNP		A	G
ss46243824	mCV22853977	ABI	CRAMUS_MOUSE	f	SNP	A		G	A
ss149094936	ENSMUSSNP2529798	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss322575454	CHEV_8_35208575	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3660740					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34612675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	770 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	157 bp distal
Rr661963	regulatory region 661963	316 bp proximal
Rr661964	regulatory region 661964	1502 bp proximal
Tssr76861	transcription start site region 76861	272 bp downstream
Tssr76862	transcription start site region 76862	804 bp upstream
Tssr76863	transcription start site region 76863	839 bp upstream
Tssr76864	transcription start site region 76864	854 bp upstream
Tssr80896	transcription start site region 80896	626 bp downstream
Tssr80897	transcription start site region 80897	1060 bp downstream
Tssr80898	transcription start site region 80898	1196 bp downstream
Tssr80899	transcription start site region 80899	1211 bp downstream
Tssr80900	transcription start site region 80900	1232 bp downstream
Tssr80901	transcription start site region 80901	1253 bp downstream
Tssr80902	transcription start site region 80902	1453 bp downstream
Tssr80903	transcription start site region 80903	1497 bp downstream