rs36607772 SNP Detail

Summary

• ID
  rs36607772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20367677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTCTAC ACTTACTCTT
  TCCCTAGTCC ATGGAGCGAT TTCTCAGCTC TCCACAGGGC CTGCTGTCTA TCACATTTCT
  CCCAGGTCTT TACTCAGCCT CCACAGGCTC AGTCAGGCTT TCTCTGCACA GTTTTTTTTT
  TTTTGCAATC GAGGTCCCTT TATCTATGCC ACCCCCAAAT CAGCAACACC AGCCTGCACC
  R
  ATGAGCCCCA ACCCACTTTA TTCTTCTTGT CCCTTGCTGG CATCTAACAC CCAGGTCTGC
  ACCTGTGTTC TCAGCACACA AAGCAAGCCT GGCACCCAAA GGAGGGCAGT AATGATTTGT
  GGATGAAAGA TGAAACCACT GCTTTGTGGG TTTGTCCTTG CTGGGCGCCA CTGATTAGCA
  CAACAGGGTT GCTAATCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076145	NES14368700	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36607772					SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076145	NES14368700	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20367677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	1743 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	324 bp proximal
Rr270988	regulatory region 270988	1324 bp proximal
Rr281054	regulatory region 281054	723 bp proximal
Rr403595	regulatory region 403595	1556 bp upstream
Tssr118580	transcription start site region 118580	1433 bp upstream
Tssr118581	transcription start site region 118581	1491 bp upstream
Tssr118582	transcription start site region 118582	1780 bp upstream
Tssr118583	transcription start site region 118583	1815 bp upstream
Tssr118584	transcription start site region 118584	1896 bp upstream
Tssr118585	transcription start site region 118585	1909 bp upstream