rs36608651 SNP Detail

Summary

• ID
  rs36608651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135239260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAA AAACCCTGGC TGCTGTGCAA
  Y
  ACAGTAGCTC TGCACCTCAA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss51380732	NES14469779	PERLEGEN	MM_PANEL2	f	SNP			T	C	C		T	C		C
ss145530451	ENSMUSSNP3327521	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss319989055	CHEV_1_137208099	CHEVERUD	SCREENING_POP	f	SNP						C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs36608651					SNP	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380732	NES14469779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135239260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi788	CpG island 788	1777 bp proximal
Rr419124	regulatory region 419124	within coordinates
Rr419125	regulatory region 419125	1589 bp proximal
Timm17a	translocase of inner mitochondrial membrane 17a	Intron