rs3660884 SNP Detail

Summary

• ID
  rs3660884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131014442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG GTGTGTGGGG CATTGTATTT
  Y
  GTGCTAGTGT CTGCTCTATA CAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5036807	WI_WGS_3_131776168	WI	MOUSE	f	SNP			C	T
ss135903629	ENSMUSSNP366566	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			C
ss320967625	CHEV_3_130923711	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3660884					SNP	T	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131014442 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Rr585299	regulatory region 585299	1053 bp distal
Rr585300	regulatory region 585300	1009 bp distal
Tssr31723	transcription start site region 31723	1998 bp upstream