rs36609330 SNP Detail

Summary

• ID
  rs36609330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAACAGT TAAATTATGA
  CATGTTCACA ATTGAGCTAT TACTTAATAA GGAGAATTAA TAAAATAAAA CTTAAGAGCA
  TAGTTTAATC TCATAAACAA GATAATAAGC AAAACAAAAC ATTTTTTCAT CCATGTAAGT
  TTAAAAGCAG GTAAAATTTA AAATTAAGAG AGACATAAGT TTTGAGGTAG CAAGATGGAA
  R
  CTCTGGGGCT TGGGGAATGT TCTGTCTCTC TGTATGGGAT GTGAAAGTTA CTATTGTGGA
  ATTGGGATCT ATGTTCTTCC TGTATATATT GTATACTTCA TAATAACTTC ACCTAAAGAA
  ATATCTAATA CCCAGTGCAT ACATAAAAGA GGATACAAGG AATGAATCAT ACGTCAAGGC
  CAGAAAGACA ATAAAGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676620	NES14820358	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36609330					SNP	A	A	G	A	A	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676620	NES14820358	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704846 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1351 bp upstream
Gm68839	predicted gene, 68839	896 bp upstream
Igk	immunoglobulin kappa chain complex	1108 bp downstream
Igkc	immunoglobulin kappa constant	1108 bp downstream
Rr158	regulatory region 158	1911 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1051 bp downstream
Tssr1880	transcription start site region 1880	1011 bp downstream
Tssr56957	transcription start site region 56957	1390 bp downstream
Tssr56958	transcription start site region 56958	1374 bp downstream
Tssr56959	transcription start site region 56959	1356 bp downstream
Tssr56960	transcription start site region 56960	1341 bp downstream
Tssr56961	transcription start site region 56961	1325 bp downstream
Tssr56962	transcription start site region 56962	1313 bp downstream
Tssr56963	transcription start site region 56963	1266 bp downstream
Tssr56964	transcription start site region 56964	1255 bp downstream
Tssr56965	transcription start site region 56965	1243 bp downstream
Tssr56966	transcription start site region 56966	1235 bp downstream
Tssr56967	transcription start site region 56967	1215 bp downstream
Tssr56968	transcription start site region 56968	1185 bp downstream
Tssr56969	transcription start site region 56969	1161 bp downstream
Tssr56970	transcription start site region 56970	1142 bp downstream
Tssr56971	transcription start site region 56971	1130 bp downstream
Tssr56972	transcription start site region 56972	1071 bp downstream
Tssr56973	transcription start site region 56973	1060 bp downstream
Tssr56974	transcription start site region 56974	1030 bp downstream
Tssr56975	transcription start site region 56975	993 bp downstream
Tssr61321	transcription start site region 61321	1353 bp upstream
Tssr61322	transcription start site region 61322	1205 bp upstream
Tssr61323	transcription start site region 61323	1124 bp upstream
Tssr61324	transcription start site region 61324	1047 bp upstream
Tssr61325	transcription start site region 61325	1014 bp upstream
Tssr61326	transcription start site region 61326	1001 bp upstream
Tssr61327	transcription start site region 61327	975 bp upstream
Tssr61328	transcription start site region 61328	897 bp upstream