rs3661089 SNP Detail

Summary

• ID
  rs3661089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84586454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTAGAA CTGGGGAACT
  TCACACCTCC CAGGACCTGT TTGGCTGTAG ACACTTACCT GGCAACCAAC CCCTCCTGAT
  CCAGGGAGGC ACTCTGACAG AGCTTGTTGT ACTCAAGAGT GCCGCCTCAT GGAGACTATT
  AGGCATTGCA GGGTCCTGCA TAGAAGCCTT TCTTCTACAT GGCCAATGGA ATTTGGCTCT
  R
  TCCTCACTCT CTATTCTGCC AACGAGGCCT GTAAACAGCC GCTTCATAGC ACTGCCTCGC
  CTCATCCTGC AGCTCCTCCA TGCAGGCTTG TGCCCTGGGT GCCCAGTCTC ACCTAGAAAA
  GCACTGGTGC CTCAGATCCA TAGGCTTCAC GGGGGAGAAA AATAAGACAC GGATCTATGA
  CTGACAAGGG GTCATTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5037013	WI_WGS_15_85502178	WI	MOUSE	f	SNP						A	G
ss48087323	NES12084284	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	G	G	A		G	A	A	A		G
ss148254540	ENSMUSSNP4527929	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss325039416	CHEV_15_84532683	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3661089					SNP	G	A	G	A	G	A	G	G	G	G	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087323	NES12084284	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84586454 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr404546	regulatory region 404546	within coordinates