rs36611013 SNP Detail

Summary

• ID
  rs36611013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35029292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAACGGA GTTTAAAGTC ATCGTCAGGG GAAGCTGGAG
  GTCTCATGTG TTGGGACTCT CCAATTCACA ACAAAACGAA GAGGTGGCCT CCAGCTTCTT
  S
  CATTCCGGCT GTTTCCATCT GAATTATACC TTGCATAGGT GGAAGCTCTT TGGCAGCTCA
  CCAAAACCTA GTTTTATTTG AATGGTACCT TTGGCCTGAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ
ss50670784	NES14013368	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ
rs36611013					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670784	NES14013368	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35029292 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	within coordinates
Cpgi21550	CpG island 21550	715 bp distal
Gm57537	predicted gene, 57537	within coordinates
Rr676432	regulatory region 676432	1248 bp distal
Rr676433	regulatory region 676433	1134 bp distal
Rr676434	regulatory region 676434	952 bp distal
Rr676435	regulatory region 676435	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	1132 bp upstream
Tssr84325	transcription start site region 84325	1229 bp downstream
Tssr84326	transcription start site region 84326	1050 bp downstream
Tssr88717	transcription start site region 88717	1203 bp upstream
Tssr88718	transcription start site region 88718	1105 bp upstream
Tssr88719	transcription start site region 88719	1010 bp upstream
Tssr88720	transcription start site region 88720	239 bp upstream
Tssr88721	transcription start site region 88721	1139 bp downstream
Tssr88722	transcription start site region 88722	1194 bp downstream