rs36611545 SNP Detail

Summary

• ID
  rs36611545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43057846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGCAAATG TCCAAGGGCC AAATGCTCCA TAAAACATGG
  AGTAGGCAGG TGGGTATGGG GGAGAAGGGA GTGGAGGGAA AGGGAGATGC AATGGGCTCG
  R
  AACTTGCAGT TTGTCTTGCA CCGGTACCCA GGGCTCAGCT TCCGCCTACA TTTCCCCTCC
  TCTCTCACTC CAATCAAACA CAGACCAGCT GAGAAGGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51478351	NES13970894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs36611545					SNP	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478351	NES13970894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43057846 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	208 bp distal
Rr645954	regulatory region 645954	within coordinates
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	211 bp downstream
Tssr65985	transcription start site region 65985	202 bp downstream
Tssr65986	transcription start site region 65986	166 bp downstream
Tssr65987	transcription start site region 65987	149 bp downstream
Tssr65988	transcription start site region 65988	137 bp downstream
Tssr65989	transcription start site region 65989	60 bp upstream
Tssr65990	transcription start site region 65990	97 bp upstream
Tssr65991	transcription start site region 65991	830 bp upstream
Tssr65992	transcription start site region 65992	841 bp upstream
Tssr65993	transcription start site region 65993	874 bp upstream
Tssr65994	transcription start site region 65994	987 bp upstream