rs36611858 SNP Detail

Summary

• ID
  rs36611858
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95974390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGGCCA AATGAGAGCA
  ACTGGAGCCT CAGAATAACT GTAATAGGTG TTTCTTAAAA CAAAGTAATG CCTGCCCATG
  GAAAAAACAC ACCTGGGACA TGGTGGGGGA GGAGGGAGGG TTTCTATATA GCCGAGTGGG
  AGCCACAGGA GTGGGAGGCC AGGGGAGGTT AGACAGAGAT GGCTCAGAGA GACCACTGAG
  S
  AGCAAGGTGC CTAGGGGCAG ACTAGTGCCC ACCAAATGGC AGGACAAGCT GGGTAGGAGC
  AGGAACATGT ATGTGCCTGC AAAGAGACCC CACTAATTGC TTGTCAAGTA GCAAGAAACT
  GTAACTTTGA AGCACAGAAA TCCTGTCCCT GAGGTTGAGG GGAATTCATT ACCTGGGAAG
  AACCCAGACA ACGTGTCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51973413	NES14990760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36611858					SNP	C	C	C	C	C	G	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973413	NES14990760	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95974390 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	within coordinates
Rr368591	regulatory region 368591	156 bp downstream
Rr668197	regulatory region 668197	1951 bp distal
Rr668198	regulatory region 668198	58 bp distal