rs36612178 SNP Detail

Summary

• ID
  rs36612178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41021450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AAGAGATGCT AAGTTCCTTG
  R
  GTAGTTCTGA ACATCGAAGA ACAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50828446	NES13536772	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		G	G		G	G	G		A
ss146399570	ENSMUSSNP5294786	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss325808838	CHEV_19_41107502	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36612178					SNP	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828446	NES13536772	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41021450 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr370497	regulatory region 370497	1727 bp downstream
Tssr5510	transcription start site region 5510	1795 bp upstream
Tssr159242	transcription start site region 159242	1875 bp upstream
Tssr159243	transcription start site region 159243	1848 bp upstream
Tssr159244	transcription start site region 159244	1831 bp upstream
Tssr159245	transcription start site region 159245	1818 bp upstream
Tssr159246	transcription start site region 159246	956 bp upstream
Tssr159247	transcription start site region 159247	944 bp upstream