rs36612405 SNP Detail

Summary

• ID
  rs36612405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82294015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCAGTTC TTTAATATCT
  GCCTGTCATA TGAAGGAACA AGGAAAATCA AAGCAAATGT GTACAGGCCT TTTAAAGTCT
  TCCAGTCACT TCAGCTGTGA GAAGAAAGGC TGAGAATTTT TGGTGAAAGG CACCACAGCA
  GTGGCCTAGG GCTGTGCCTC TGTGATGGGC GCATGTCCCA AGCCAGACAC CACTCTGTGA
  M
  AGCCCTCACT CTGCTACCAT CACTAGCCTA AGACTTCCTG TAGACTTTTA GAGCCTCAAC
  TCAGGCCAGA CCAGGATTGG TGACTTTGAG GCTGAAAAGA ATTTCGGGAT TGGCCAGTTC
  AGTGAAATCA AGTTGGAGAT TTTATTAAGC ATATCTTAAT ATAAGTTTAA GCATGGGGTT
  TACAAGAGAG AGAGGCTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51025941	NES14384759	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36612405					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51025941	NES14384759	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82294015 () rs orientation: forward

Symbol	Name	Function Class
Rr268532	regulatory region 268532	within coordinates
Rr403397	regulatory region 403397	1501 bp downstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114222	transcription start site region 114222	1714 bp downstream
Tssr114223	transcription start site region 114223	1540 bp downstream
Tssr114224	transcription start site region 114224	1496 bp downstream
Tssr114225	transcription start site region 114225	1426 bp downstream
Tssr114226	transcription start site region 114226	572 bp downstream
Tssr114227	transcription start site region 114227	460 bp downstream
Tssr116943	transcription start site region 116943	1833 bp upstream