rs36612924 SNP Detail

Summary

• ID
  rs36612924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128811902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CAAATTTACC AAATCAGGGA
  Y
  GTATGGAAAT CTCTAATTTT CAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843741	NES14705129	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36612924					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843741	NES14705129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128811902 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	522 bp downstream
Cpgi16665	CpG island 16665	1010 bp proximal
Gm71554	predicted gene, 71554	514 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	1233 bp upstream
Rr621172	regulatory region 621172	522 bp distal
Rr621173	regulatory region 621173	642 bp distal
Tssr1644	transcription start site region 1644	1322 bp upstream
Tssr48983	transcription start site region 48983	1248 bp upstream
Tssr48984	transcription start site region 48984	1287 bp upstream
Tssr48985	transcription start site region 48985	1330 bp upstream
Tssr48986	transcription start site region 48986	1404 bp upstream
Tssr53471	transcription start site region 53471	1173 bp downstream