rs36613172 SNP Detail

Summary

• ID
  rs36613172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159222692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAATGG TATGGCTTAA
  TATACATTCT TTGCATTTTT TTTTCTAGAC GATCTTCCAC ATTGGGTTTT ATCTGCAATG
  AAGTGCCTAG CAAATTGTAA GTTAAACCAA ACCACAAGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTTTGTGCA CATGCATGCA TGTATGTGTG TGTTGTGTCA
  R
  TCTGTCCACT TGTATGTCTG TCTGTTTGTT CTATTAATAG TGTTTAAGAA TATTAAAGAA
  AATATTTAAA ATTGTGAGTC AAATGATAGT CAAGTGAAAT TTTTTATAAG CTCTTTATTT
  TCTATGTAAA AGGTTATTTT GTGATTAGAA TCTGTCATTT ATGGTTCAAC TTAAATAAAT
  CATAAACTCA TAGTCTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676406	NES14641261	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36613172					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676406	NES14641261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159222692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			639 bp proximal
Rr588124	regulatory region 588124			837 bp proximal