rs36614480 SNP Detail

Summary

• ID
  rs36614480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44149473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCGGAGAT AGAGATTTGA GGTGCAACCG GAAGGTATCA
  CTGAGAAATT GGTGATAGGG CAGGACCAGG ATGCGAGAGA GGTTAAGACA GAAATCTGGT
  K
  GCTGGCCACG GTAAGCATCA CACAGCCCAT CCAGTAGTGG GAGTCCACAG CGATGGTGAC
  ATGGACTAGA CCATGACTGA GCCTCCCCTT CTCTCTTCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51891397	NES14911132	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36614480					SNP	G	G	G	G	G	G	G	T	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891397	NES14911132	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44149473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	within coordinates
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	1640 bp upstream
Mybpc2	myosin binding protein C, fast-type	1650 bp downstream
Rr380742	regulatory region 380742	1974 bp downstream
Rr646111	regulatory region 646111	1524 bp proximal
Rr646112	regulatory region 646112	1651 bp proximal
Rr646113	regulatory region 646113	1859 bp proximal