rs36614665 SNP Detail

Summary

• ID
  rs36614665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188753972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTACAGCC TGAAGACTGC
  TCCCCTATAG AGACAGCTCC TACCCAGATT AGACAAGCCT GCCTCCTTGT TTAGCATTTA
  TAATAGCTCC AGCTTCCTGT TCCATTGCAT ACAATAAAGC AGGAAGTGTG GCTTCTCCAT
  CAGAAAGCCC AAACCACTTG ATCCCAACTT CTCTATGTCT GTGATTTCTT CATTCTCTTG
  Y
  AGCCGTATTG TCAGGATTCT GGGAGCCAGG CCATGCAAAG CCATGGCAAA AAAAACCATA
  ATTATAAGGT GCTCTCAGCA GCTTATAATT TTTGACACAA CTGCTCAGTC ACACAAGTTC
  TTCCATGCAT CCATCCCAGC TGCATGCAGT CTCAGGAGGC GCTAGAGTAT GGAAGTGTTG
  ACTGAATGGA AGAATCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419710	NES14448915	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36614665					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419710	NES14448915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188753972 () rs orientation: forward

Symbol	Name	Function Class
Rr425741	regulatory region 425741	1553 bp proximal
Rr425742	regulatory region 425742	1663 bp proximal