rs36615492 SNP Detail

Summary

• ID
  rs36615492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133988804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGGAGG CACCGAAAGC
  ACCACAGCCA CCCGCCCTTC CTGAAAGGTC CTGCTGTGCG TGCTCCGCGG TGAGCAAGGA
  ACCCAGCTCT CAAACCTAGT GTCCCCACCC AACTCCCCCT CAAGCTTTGA TTGGCCCGCT
  CCTTCCCTAG GCCAGCCAGT CAGAAGCTTG TTACCAAGGC GGAGCTTCCC TCCGACCCGG
  Y
  GAAGGCTGTA TCCCCACTGT TGTTGCCGAG CAAGCAAAGC TGCTTTGCAA AGCTCGTTCG
  GTGGTTTAAA TCCTAGCCAG ATGCTACTGT GGGGGCTGAA GGACGAGGGT GGGTGGCCCA
  GGGCTCCACC CTAGTTACAT AGCCTGGAGG CAGGGAGCAG ACACCTGCCT GCCCTCGTCG
  CCCCGGCCAG CCTTCGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373642	NES14471783	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36615492					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373642	NES14471783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133988804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	within coordinates
Gm19497	predicted gene, 19497	119 bp upstream
Gm57140	predicted gene, 57140	within coordinates
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1004 bp distal
Tssr8846	transcription start site region 8846	6 bp upstream
Tssr8847	transcription start site region 8847	29 bp upstream
Tssr8848	transcription start site region 8848	70 bp upstream
Tssr13763	transcription start site region 13763	251 bp upstream
Tssr13764	transcription start site region 13764	193 bp upstream
Tssr13765	transcription start site region 13765	107 bp upstream