rs36616796 SNP Detail

Summary

• ID
  rs36616796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85589994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTATCA TCACAGGCCT
  GCCCACCACG GGCCAGGCCA CACCAGCGCT CTGGGAACCT TGTTCCTAAG CTCCTCTGCC
  CCATAGACTC CGGATCTGGG GCCACAATGT GGACTTAGAC CTAACGGCTT CATTTTGACC
  CAGGAGTTTT GGACTTGTCC CTTGACCCTT GGCAGAGAGG AAAGGAGGCG TGACAGTAGA
  Y
  GCTAGGGCTC ATGCAGAGAG CAAAAGCTGC CTGGCTTCCT AGGTCTGGGC ACAGGGCTTC
  CCTCCACATG CTGGGCAAAC CGGTCTGAGG CCTGAAAGAA GCAGGTCTTT TTCCCTTCTG
  AGAGCAGAGC TACCTGAGAC CAGAGACTGA GCCTCAGTTT CTTCAGCGAT CTCTGCTGGC
  CTCTGGAAGT GCTAGTCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51732918	NES14561444	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36616796					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51732918	NES14561444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85589994 () rs orientation: forward

Symbol	Name	Function Class
Lncppara	long noncoding RNA near Ppara	within coordinates
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	810 bp proximal
Mirlet7b	microRNA let7b	1526 bp upstream
Mirlet7c-2	microRNA let7c-2	810 bp upstream
Rr507291	regulatory region 507291	1934 bp distal
Rr507292	regulatory region 507292	within coordinates
Rr507293	regulatory region 507293	1348 bp proximal
Tssr135762	transcription start site region 135762	1809 bp upstream