rs36617585 SNP Detail

Summary

• ID
  rs36617585
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20367621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTCTCCA CAGGGCCTGC TGTCTATCAC ATTTCTCCCA
  GGTCTTTACT CAGCCTCCAC AGGCTCAGTC AGGCTTTCTC TGCACAGTTT TTTTTTTTTT
  K
  CAATCGAGGT CCCTTTATCT ATGCCACCCC CAAATCAGCA ACACCAGCCT GCACCGATGA
  GCCCCAACCC ACTTTATTCT TCTTGTCCCT TGCTGGCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076147	NES14368699	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36617585					SNP	G	G	G	G	G	T	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076147	NES14368699	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20367621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	1799 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	380 bp proximal
Rr270988	regulatory region 270988	1380 bp proximal
Rr281054	regulatory region 281054	779 bp proximal
Rr403595	regulatory region 403595	1612 bp upstream
Tssr118580	transcription start site region 118580	1489 bp upstream
Tssr118581	transcription start site region 118581	1547 bp upstream
Tssr118582	transcription start site region 118582	1836 bp upstream
Tssr118583	transcription start site region 118583	1871 bp upstream
Tssr118584	transcription start site region 118584	1952 bp upstream
Tssr118585	transcription start site region 118585	1965 bp upstream