rs36618430 SNP Detail

Summary

• ID
  rs36618430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGAGTT GGGATTCTGA
  GTCAAGGCCA CTGACCCAGG TCCATGAGGA AGTGTTCGAT GTCTTCGTAG AGACTGTTGG
  TGCTAGACAA GCACAAGCCG AGACTGCTGC TGTCCAGGGA GGACACACCC TCACGCTGCA
  CGCCCTCCAG GTATGCCTTG CATACCCATG GCTCCAGCTG TGGAAAGGAC ATGTGTTAAG
  R
  CTCTTTCTTA CCTAGCAGCC CACACCTTCC CTTGGCCCAC CCAGGCTCTA CCTTCACCAG
  GATCAGGGTC TTCTCCTTGG GCCTCCCTGC TGACAAGTCT TGCCCAAAAC CCAGGTAGAT
  GGTGTAGTGT GGTGACCCTT GCCGCCTCCG AGCCCGAAAC TCCTCCAGTT CTGTTAAGGA
  GATAGCTCTG GTGAGCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51935589	NES14951795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36618430					SNP	A	A	A	A	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51935589	NES14951795	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843317 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	654 bp downstream
Rr154683	regulatory region 154683	1684 bp proximal
Rr166948	regulatory region 166948	1483 bp proximal
Tssr69941	transcription start site region 69941	206 bp downstream
Tssr75604	transcription start site region 75604	121 bp downstream
Tssr75605	transcription start site region 75605	279 bp downstream
Tssr75606	transcription start site region 75606	417 bp downstream
Tssr75607	transcription start site region 75607	493 bp downstream
Tssr75608	transcription start site region 75608	550 bp downstream
Tssr75609	transcription start site region 75609	568 bp downstream
Tssr75610	transcription start site region 75610	593 bp downstream
Tssr75611	transcription start site region 75611	849 bp downstream
Tssr75612	transcription start site region 75612	1111 bp downstream
Tssr75613	transcription start site region 75613	1839 bp downstream