rs36618840 SNP Detail

Summary

• ID
  rs36618840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114337121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTACACGT AACATGCTAG
  TTAAACATCG CTAAACCACC CACCCTCACC GGCAGACGTT AAGGGAAAAG GGGGAAAGAC
  ATTTATCACC CTAAAAAAAC AAGAGAGCCC CACCCATACA TGTGAGCAGT CTCCCTCTAA
  AGGAGAGCTA CAGACTGCTA GGAGCACCAA GAACCAAAGC TGGTTACAGC ACAAGTAAAC
  R
  CGTTGCTGCC AGGGGCGCCA ACATTCAGCC AGTGTGCTCT GAGATAGGTA AGGTACGACC
  TGAGCTCCTG AGTTAATACA ATCATTAAAA GGGGTCTAAG ACCAATGCAG ATACAAAACA
  AACATTTAGA ACCATTACTG GTTAAATGAT GATGGAAAAA CAGCCGTCCA GGCTGGATTG
  CTGACCCGTA ACACCAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042489	NES15055422	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36618840					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042489	NES15055422	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114337121 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	1880 bp proximal
Rr207539	regulatory region 207539	1480 bp proximal
Rr368881	regulatory region 368881	1925 bp upstream