rs36619172 SNP Detail

Summary

• ID
  rs36619172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTAGATC TAAGGAGACC
  CACTTTATTG TGTGATCAAA ATTTTTTCTT AGAGATTAAA AAAAAACAAA CCTGAAATGG
  AGTCTACAAA GAAAAGGATG TTTTACAGAG AGAAAACTTT CCAGATTATC TGACTCTAGT
  CTGTCATTTA TCCTGATTTT AGTTTTTCTT GACATTGAGC AATTTTAGTC TCTGAAGTTG
  Y
  AGCTAATTGA TAAGTCATAT AAAATATGTC CACTAGTGAG ACAGCTTCAA GAGTCTTAAT
  GTATAAATGA GCTTATTTAT ATTATGCTTT TTAAAATTGT GGTAAAATAT ACATAGCACA
  AAACCTTATC ATCTCAACCA CCTTTAAATG TAAAGTCAGG GCAGCTAAAG TCAGGGACAG
  CAAGTGTACT GTGCGCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674843	NES14008210	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36619172					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674843	NES14008210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1200 bp proximal
Gm10177	predicted gene 10177	791 bp downstream
Gm48081	predicted gene, 48081	1526 bp upstream
Gm65989	predicted gene, 65989	607 bp downstream
Rr676656	regulatory region 676656	702 bp proximal
Rr676657	regulatory region 676657	1432 bp proximal
Rr676658	regulatory region 676658	1537 bp proximal
Rr676659	regulatory region 676659	1756 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1385 bp downstream
Tssr88822	transcription start site region 88822	1409 bp downstream
Tssr88823	transcription start site region 88823	1431 bp downstream
Tssr88824	transcription start site region 88824	1457 bp downstream
Tssr88825	transcription start site region 88825	1472 bp downstream
Tssr88826	transcription start site region 88826	1558 bp downstream
Tssr88827	transcription start site region 88827	1651 bp downstream
Tssr88828	transcription start site region 88828	1674 bp downstream
Tssr88829	transcription start site region 88829	1697 bp downstream
Tssr88830	transcription start site region 88830	1713 bp downstream
Tssr88831	transcription start site region 88831	1758 bp downstream