rs36620063 SNP Detail

Summary

• ID
  rs36620063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143566547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGATT CAATCCAGGG
  CTCACATGGG CTGAGCAAAT GTTCTCCCAC AGGACTTTAG CTCTAACCTT TGATTTGCTT
  TCTAAACCAG AAAGAAACAC TTACAGGATG GACAGGATTT TTTCTTCTTT TTGTCTTCAC
  AAGACAGCAA CATAGTTATT AGTATCTGCC AGCGATATTT TATCACGCTA CTGTTACCAT
  S
  TGGAAATTAA TACCTATCAA GGAAAGTGTT GCTCTTATCT CCCTTAAATA CTACTCATTT
  TTAGTTCCTC TTGAGACTCC AAGCTAAAAC CAGTTCATAG TTTCTAACTT TTTAAACTTG
  GACACTACTG CTTACAAAGC AAAACAGCAA GGTATATTGT ATCATTTCAT CCATGGTCCA
  AACACTGACT TGGCTAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51659546	NES14643706	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G	G	G	G	G	G	G	G	G	G
ss136026667	ENSMUSSNP6591767	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36620063					SNP	C	C	G	G	G	C	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51659546	NES14643706	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143566547 () rs orientation: forward

Symbol	Name	Function Class
Gm33925	predicted gene, 33925	within coordinates
Gm40160	predicted gene, 40160	649 bp downstream
Rr79606	regulatory region 79606	1455 bp proximal