rs36620066 SNP Detail

Summary

• ID
  rs36620066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118056131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATGTGA GGTTTTGGTG
  ACTGACTCGG GCTTAGGAAT GAACCCCACT CACTGGCTTC TGGCTGGGTA GAGATGCAGC
  TTGTGCAGTC TGCTAATGGC AGCAGTTAGA CACATTGTTT TTAACCGGCT CACATCCCCT
  TCCCCCAGAA ACAAGTTCGA TGTCTGGCTG CTTCACATCT GTGCCAACAT TTGTCGTTGT
  Y
  TATCTCCTGC TTTAGCCATT TTGGTGGTTG TGTAACAGTG TTCAATGTTC CTGGGTGGTT
  GGAATCCTTT CCGACAGAAT GCTGGGAAAC GGTCATTCAT CCTTGGATGA TGGTGTTGTT
  ACTGTTGAAG CAGAGGGGCT TGAAACGGAT GCTTTTCTGA TGCTGGGAGA CGGACTCGTC
  CCTCTGCGCA GTGCCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51982241	NES14998175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36620066					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51982241	NES14998175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118056131 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Tssr79599	transcription start site region 79599	514 bp downstream
Tssr79600	transcription start site region 79600	1004 bp upstream