rs36620103 SNP Detail

Summary

• ID
  rs36620103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126768512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCGTGTC TTCCAGCCTC
  AAGATCTGGA TCACAGATGA GCCCTTCGAT TCTGGATTGT AGTTCATTCC AGATAGCGTC
  AAGTTGACAA CCAGGAATGA CCATTGCATA GCCCTTCAGT GAATTTGCAT GAGTCTTTGT
  GGCTCAGGTC CCCAACTGTT CTGTGGCTAT TACCTTCAGC AGGTACCCCC TAAAACTTCT
  Y
  TGCAAGAGCA ATATATAAAG TAAAAAAGAT AGCTAGTGGT GTTACTCATG GAGGAAGTGC
  TTGCCTGGCA TGCAGGAAGC TGGAAACGAA GTGATGGGGG GGGGGAGTGA GGTGACAGCC
  AATAAAATTG TCACCAGGAG AACGGATGTT GTAAAGCAGA GCCTTCCTGC CTGTTCTCCC
  TCCCCTGTGG GCCTGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51411619	NES13709719	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36620103					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51411619	NES13709719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126768512 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	900 bp downstream
Gm67331	predicted gene, 67331	within coordinates
Rr638910	regulatory region 638910	469 bp proximal
Rr638911	regulatory region 638911	539 bp proximal