rs3662141 SNP Detail

Summary

• ID
  rs3662141
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113392816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC CTTGGCTAGG GCTCCAGGAT
  K
  ATCTCAGATG GAGGCCAGTG AGGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss5038072	WI_WGS_12_107710474	WI	MOUSE	f	SNP	T			G	T
ss138742361	ENSMUSSNP5625839	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			T
ss324175493	CHEV_12_114667407	CHEVERUD	SCREENING_POP	f	SNP							T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs3662141					SNP	T	T	T	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113392816 () rs orientation: forward

Symbol	Name	Function Class
Gm56536	predicted gene, 56536	1829 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1332 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	585 bp downstream
Ighj2	immunoglobulin heavy joining 2	272 bp downstream
Ighj3	immunoglobulin heavy joining 3	64 bp upstream
Ighj4	immunoglobulin heavy joining 4	629 bp upstream
Rr148	regulatory region 148	1558 bp distal
Rr149	regulatory region 149	1610 bp distal
Rr150	regulatory region 150	1467 bp distal
Rr554	regulatory region 554	1224 bp distal
Rr555	regulatory region 555	1790 bp distal
Rr403536	regulatory region 403536	1538 bp downstream
Tssr3971	transcription start site region 3971	1723 bp upstream
Tssr3972	transcription start site region 3972	1683 bp upstream
Tssr3973	transcription start site region 3973	1665 bp upstream
Tssr115504	transcription start site region 115504	1031 bp upstream
Tssr118001	transcription start site region 118001	1902 bp upstream
Tssr118002	transcription start site region 118002	1866 bp upstream
Tssr118003	transcription start site region 118003	1800 bp upstream
Tssr118004	transcription start site region 118004	1774 bp upstream
Tssr118005	transcription start site region 118005	649 bp upstream
Tssr118006	transcription start site region 118006	618 bp upstream
Tssr118007	transcription start site region 118007	572 bp upstream
Tssr118008	transcription start site region 118008	545 bp upstream
Tssr118009	transcription start site region 118009	534 bp upstream
Tssr118010	transcription start site region 118010	396 bp upstream
Tssr118011	transcription start site region 118011	298 bp upstream
Tssr118012	transcription start site region 118012	63 bp upstream
Tssr118013	transcription start site region 118013	48 bp upstream
Tssr118014	transcription start site region 118014	46 bp downstream
Tssr118015	transcription start site region 118015	112 bp downstream
Tssr118016	transcription start site region 118016	294 bp downstream
Tssr118017	transcription start site region 118017	624 bp downstream
Tssr118018	transcription start site region 118018	1180 bp downstream
Tssr118019	transcription start site region 118019	1197 bp downstream
Tssr118020	transcription start site region 118020	1253 bp downstream
Tssr118021	transcription start site region 118021	1393 bp downstream
Tssr118022	transcription start site region 118022	1425 bp downstream
Tssr118023	transcription start site region 118023	1590 bp downstream