rs36621640 SNP Detail

Summary

• ID
  rs36621640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117234391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAGGA ACCCTCAAGG
  GACAAAGGGA CAGCAGCAGA GAGCGGGGCC TGATGGGGAC AGGCTGGTTC TAGGCAGGGG
  AGGCCTCCAG ACAGGGCTTC CCAAGCCCCC TGCAGTAAGA ACGGGGCAGG GCAGGCCCAG
  CTGTCAACTC CATAGGACTG ACTCTGGAGT CAAAGGGAAA TCACTAGACC AGGAAAGAAA
  Y
  CGACATCCTG GAATGTGGGT AGCAGCACAA AAAAAAACCT TCAAATTTCA ACGAAGAGGC
  GAATGTCTGG GAGACACCAT CTTTCGGACC TTTTCTGCTT ATGCAAGGAA CCTGGTGAGT
  TCTGACACTT CAAACCAGAA GCCCGTGCTG AGAGGGCCGC ATGCCAGTGG TTACAGGTTT
  CTCTTTTTTA AAAAAAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51186310	NES13827052	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36621640					SNP	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186310	NES13827052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117234391 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	1565 bp distal
Rr618555	regulatory region 618555	1702 bp distal
Rr618556	regulatory region 618556	71 bp proximal
Rr618557	regulatory region 618557	436 bp proximal
Rr618558	regulatory region 618558	541 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron