rs36621654 SNP Detail

Summary

• ID
  rs36621654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:16112813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAACGTGGA AGTGATTTCC
  CGAGGGGGAA ACCCCCCCAG TTCTCCAGCT AAGAAAGTGG TAGCTGTAGG TGTGTGGCGG
  CCCTCCCGCA CTGATTCTAG ATGGAGCAGG GTTTAACCTG GCCCCACCTC ACCCGTCAAT
  GACAGGCTGT TGGAGCTGGT AGGAAACCTG CCACTTACTC AGCACCTACA TCCACGAGCA
  R
  CATTTAAAAA CCATACAGTT CTCAGTCAGA AGCGGGCGCC CTGGACATCC TTAGCAACCA
  CGGCTGCCCT CAGCCTGGAG GGGCTTCTTT CCCAAGTGCG GTATCCACAC TGTTTGTGTA
  GTCATGATAG ACATTAAGGG TAGACTTCTC TCTCTCTGTC TGGGTATGAC TTTAGCAGGA
  AAATGAGTGT TGAATTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50637936	NES13610169	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36621654					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50637936	NES13610169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16112813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	1359 bp distal
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	Intron
Rr544692	regulatory region 544692	931 bp distal
Rr544693	regulatory region 544693	within coordinates