rs36621809 SNP Detail

Summary

• ID
  rs36621809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44839154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCACCTC TGAGAGGACT GCTTCACGCT GGCAAATGAG
  TCGTTCGCAC TCACAGAGCT GCCGCTGCCA AGGAAAGAGC CTATCCATCT CTTCACAGGC
  Y
  TCCCACATCT CCCCTCGGCC TCCCACTGCG CACCCTCCTC CCTGCACCGT CCCTGTCCAG
  TCTTCCCTCA GCTGCCAGTG ACACCCGTGG GTGTCAGCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51480574	NES13972255	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36621809					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480574	NES13972255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44839154 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	within coordinates
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	1971 bp proximal
Tssr72334	transcription start site region 72334	1017 bp upstream
Tssr72335	transcription start site region 72335	164 bp upstream
Tssr72336	transcription start site region 72336	80 bp upstream
Tssr72337	transcription start site region 72337	17 bp upstream
Tssr72338	transcription start site region 72338	64 bp downstream