rs36621965 SNP Detail

Summary

• ID
  rs36621965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60235689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGCGAC AGGCTGGAGT
  GAGCCAGGCG AAGGCCTCTC TCTCTTTCTT TCCCACTCAG TTGCTACTTC TACACTCCCA
  CTTGTCCCCT CCCCAAGACA GGCCAGGACT CTCCCAACAA AACCAGGCCC AGGAGAAAAA
  GCAGGAGGAA AGGCAGTCTG CTGCAGGCTC TGCTGCACAA CATAGGATCA CAGCCGGACC
  R
  CTGGCATACC TCGGATCTCC TGGGACAACT GGGAAACCTG GCCACTGAGA ATACAGACCT
  CCAAGGGTAG GCCGAGAGGT CAATGCTGAG AACTATAGAG AAAGCCAATG TAAGAAGTGG
  GGGAGACCAT TATTGGGAAC TTGGGAGGCC GTGAAGGTGT GCTCAGATTC AGGGAGCCCG
  ACTATTACTC TGAGAAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss50866214	NES14170268	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A
ss323325379	CHEV_10_59862658	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs36621965					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866214	NES14170268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60235689 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr215449	regulatory region 215449	1489 bp distal
Rr223077	regulatory region 223077	1059 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	138 bp downstream
Tssr93634	transcription start site region 93634	105 bp downstream
Tssr93635	transcription start site region 93635	34 bp downstream
Tssr93636	transcription start site region 93636	843 bp upstream