rs36622163 SNP Detail

Summary

• ID
  rs36622163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5875060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCCGG TCCTGATGCC
  CTGCCAAAGG CTCCAGGGGA CTCATGTCCC CCTGCCTCCA AGTGAGTGTT CCCCACCCTA
  CATGAGAAGT GCATGCATGA AATCAGACTC CAAAAAATGA ACCACAAGTC ACAGCCTAAT
  TGCTCTGAGA CAGGGTCTGG TGCAGTAAGC TCTGTGTGTG TAGACACTCC CTAAGCCACC
  S
  GAGGGCTGCC TCTGTGTGGT GGGGAGGTAG GAGAGGGGAA GAGGGTTGCT ATTCTCATTT
  TATACTTTTC CCACGGCTTC CAACTTTATG CCAATAACTC ACAATTAAAC AGGTCTCAGA
  ACTAAGGGAG CTTTCAACAC TTGGGCTAAC TCAAGTGCAG TGAGCGAACG GGTTCTCCAA
  ACCTGCTGGG TCCTGGCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577300	NES13648718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36622163					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577300	NES13648718	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5875060 () rs orientation: forward

Symbol	Name	Function Class
Gm55522	predicted gene, 55522	325 bp upstream
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr363632	regulatory region 363632	1259 bp distal
Tssr157766	transcription start site region 157766	949 bp downstream
Tssr157767	transcription start site region 157767	1639 bp downstream
Tssr157768	transcription start site region 157768	1735 bp downstream
Tssr157769	transcription start site region 157769	1797 bp downstream
Tssr157770	transcription start site region 157770	1887 bp downstream
Tssr157771	transcription start site region 157771	1927 bp downstream