rs3662313 SNP Detail

Summary

• ID
  rs3662313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:76790217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGGATA AAATTTGAAA
  TGTAAATAAA TAAACTATCC AGTAAAAATT CATTAACATA TATATAATTT TAATGTTGTC
  TTTTCTTGAC TCAATATGAT ATCACAAGTG ATTGTTTGTT AGAATGACTT CAAGTATTGA
  AAAATCCTTT CTTTAACTTA TTTAATATAT CCATATGTAT CCTTTGCTAT TGTTTGTGAA
  Y
  ATTTTTAGAT GTATATCCAC ACCTCTAAGA AAGTAGCGTT ATTATTCTAG AATATTATAC
  TGAATATACA TAAGATTCTG AAGAAACCTT GTAAACAAAT TTAAGGAAGA CAGTACATAC
  CCAAATGCTT ATCTATACCA TATAAAACAT TAATATACAT GTGTATTTAT TGATATTTAA
  TTAAACATTT GTCAATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5038246	WI_WGS_1_77665153	WI	MOUSE	f	SNP				C			T
ss60755699	NES16392111	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C		C	T	T	T	C	T	T	C	C
ss144717337	ENSMUSSNP5048573	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3662313					SNP	C	C	T	C	C	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60755699	NES16392111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:76790217 () rs orientation: forward

Symbol	Name	Function Class
Gm70762	predicted gene, 70762	1016 bp upstream