rs36623859 SNP Detail

Summary

• ID
  rs36623859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118104836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGATCC AGGCTGGCCT
  TGCTGGTCGC TTGGGAGTAT GCTGTATTCT CTGGCCCCAT CCTCACCTTT GACCATAGCA
  GCTGATGGCC CTTCTGGTAC CATCCTGAGG CAGGAGAGCA GTTGACCCGC AGCCGTGTGA
  GGGATACTGT GTGACACATC CCTGTCCATA TTGTCTTCTC TTAGAGGACA TCCAAAGCCA
  W
  GCCTGCTGTA GCCCATCTTG GAACTCAGCC ACCGTGCTCT GCCCTCTGTG ACCCACCCAC
  CCCCTATCTT CATCATGTCC CCTCTGGCCA GCAGAGCCCC CTGGTTCCCT CTGTTGTCTC
  CTTGTCCTTT GTTTGTTTGT TTGTTTGTTT GTTTTTGTGT TTTCAAGACA GGGTTTCTCT
  GTATAGCCCC TGGCTGTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51982063	NES14997552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36623859					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51982063	NES14997552	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118104836 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Rr670847	regulatory region 670847	1030 bp proximal
Tssr79606	transcription start site region 79606	1251 bp upstream
Tssr79607	transcription start site region 79607	1292 bp upstream