rs36624253 SNP Detail

Summary

• ID
  rs36624253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73966234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTCTCT GTTCATCTCT
  TGGCAGCCTG GACAGGGCTC AGGGCTCGAC CAATATGGGT GTGAGTAGCA AACTGACCCC
  AGTGAAGGAG GAAAGCTGGA GTCTGGAAGC CATGGGGATC CCAGCACCCA GGGCAGTGGG
  CTCCAGAAGA GCCAGGGGGC AGGGTCTCCA CTGTCTGGGA GACTTGTACT TATTAACCAG
  Y
  TTCATCCTCC CTGCTGGGCA TTCTGACTCT AGACCTCGCC CAAACCCATC TCAACCTCTT
  TCCCATCATG ACATGGAGTC TTGGTCTCAC CACCCATCCT CAAAGCTTCC CAGTGCACCC
  CAAGCAGGAG CTTTTCTGAA GGATTGGCCT CTCCTACCCA GCCCTGGGGA TCCCATTTGC
  TCCCTGTCTG GCTCCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276668	NES14517879	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36624253					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276668	NES14517879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73966234 () rs orientation: forward

Symbol	Name	Function Class
Rr413030	regulatory region 413030	503 bp distal
Rr413031	regulatory region 413031	615 bp distal
Rr413032	regulatory region 413032	266 bp distal
Rr413033	regulatory region 413033	1194 bp proximal
Rr413034	regulatory region 413034	1428 bp proximal
Rr413035	regulatory region 413035	1996 bp proximal
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	1420 bp downstream
Tssr12216	transcription start site region 12216	1429 bp downstream