rs36626094 SNP Detail

Summary

• ID
  rs36626094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68730440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAAAATC AGCCTAGCAA
  GAACTTTCCT CAACAAAAGT AAACCATCCG CAGCCACTCC TGCCCTGGGG GGTTCATGGG
  CCCTAGGTGG AGTCACTCAC TGTTTGCAGA TTTTCTCAAT AGTGTTTCTC TTCACTATGG
  CCCTAGAGAA GCAGGGATAA CCAGCTACAT CTTGCTCAGT TCCCTGACAA GCTTCTCTTG
  Y
  TTGTGGAACG AAACAATGTA TTTATAATTT TTAATTTAAT AAATAAGTGG AAGAAATACT
  TAGGTGAAGA TTGGGCACAA ATGGACTTGT CTAGTTATAT CTGTGAAATA CTTCAATCTC
  GAGAGCATTT ACAGAACTTC CAGCTGCTCT CACCACTTGC AATTTATTTT ATTTTCAAAA
  TCATCAAGTA AATTAATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50562509	NES14070945	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36626094					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50562509	NES14070945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68730440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20401	CpG island 20401	224 bp distal
Rr664393	regulatory region 664393	1211 bp distal
Rr664394	regulatory region 664394	63 bp distal
Rr664395	regulatory region 664395	247 bp distal
Rr664396	regulatory region 664396	962 bp proximal
Rr664397	regulatory region 664397	1299 bp proximal
Sh2d4a	SH2 domain containing 4A	within coordinates
Tssr77594	transcription start site region 77594	1083 bp downstream
Tssr77595	transcription start site region 77595	1036 bp downstream
Tssr77596	transcription start site region 77596	973 bp downstream