rs36627034 SNP Detail

Summary

• ID
  rs36627034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCGGGAG GACAGGAAGC
  AGGAGGCGGG CGTGAGGTGG GGTCCTGAGG CAGGAGAGAG CCCGGGCCAG CTCGAGCCGC
  CCAAGCTTGG ACGACCAGAG AGGGCGCCGA GAGGACGGCT TTGGGGGCGA GGCAGTGAGG
  GAAACCGCGG TGGACCGCTG CAACGTGAAG TGTAGGATGT TGGCAACTTT CGGGACCCGC
  R
  TGAGGTTTGG GTATCAGAGT GGGTGGAGAA GCCCTGGGAG ACAGACTGGA GGGCTGGACG
  GAGAAAGCAC CCTGCAAGCC GTGAGGAACA CCCCATCTTT CCGGGTCCTG GGCTGGCAGC
  CAAGGCTAGG AGACCAGGGA CGAGACCAGC GGACCGTTAC GGCGAGGCCC CTAGGTGGAC
  CCGGCCAACC GTGTGCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368056	NES14475967	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36627034					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368056	NES14475967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	1143 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	522 bp upstream
Rr396287	regulatory region 396287	833 bp upstream
Rr418128	regulatory region 418128	1627 bp distal
Rr418129	regulatory region 418129	126 bp distal
Rr418130	regulatory region 418130	511 bp distal
Rr418131	regulatory region 418131	within coordinates
Rr418132	regulatory region 418132	577 bp proximal
Rr418133	regulatory region 418133	1374 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	1481 bp downstream
Tssr8628	transcription start site region 8628	1307 bp downstream
Tssr8629	transcription start site region 8629	1098 bp upstream
Tssr8630	transcription start site region 8630	1141 bp upstream
Tssr8631	transcription start site region 8631	1220 bp upstream
Tssr8632	transcription start site region 8632	1601 bp upstream
Tssr13589	transcription start site region 13589	1598 bp upstream
Tssr13590	transcription start site region 13590	1528 bp upstream
Tssr13591	transcription start site region 13591	1501 bp upstream
Tssr13592	transcription start site region 13592	1409 bp upstream
Tssr13593	transcription start site region 13593	1332 bp upstream
Tssr13594	transcription start site region 13594	1222 bp upstream
Tssr13595	transcription start site region 13595	1175 bp upstream
Tssr13596	transcription start site region 13596	1142 bp upstream
Tssr13597	transcription start site region 13597	913 bp upstream
Tssr13598	transcription start site region 13598	212 bp upstream
Tssr13599	transcription start site region 13599	170 bp upstream
Tssr13600	transcription start site region 13600	15 bp upstream
Tssr13601	transcription start site region 13601	506 bp downstream
Tssr13602	transcription start site region 13602	542 bp downstream
Tssr13603	transcription start site region 13603	763 bp downstream