rs36630400 SNP Detail

Summary

• ID
  rs36630400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83482702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC GATTTGCTGA ATGAATAAAA
  Y
  GAGAAACTAT TTGCTGCTAG AATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354505	NES13746147	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	C	C	T	T	T	T	T	T	T
ss133348063	ENSMUSSNP5686688	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36630400					SNP	C	T	C	T	C	C	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354505	NES13746147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83482702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	782 bp proximal
Dguok	deoxyguanosine kinase	within coordinates
Rr399724	regulatory region 399724	1157 bp upstream
Rr632884	regulatory region 632884	within coordinates
Rr632885	regulatory region 632885	1239 bp proximal
Tssr1908	transcription start site region 1908	1361 bp upstream
Tssr61663	transcription start site region 61663	536 bp downstream
Tssr61664	transcription start site region 61664	1096 bp downstream
Tssr61665	transcription start site region 61665	1110 bp downstream
Tssr61666	transcription start site region 61666	1118 bp downstream
Tssr61667	transcription start site region 61667	1145 bp downstream
Tssr61668	transcription start site region 61668	1169 bp downstream
Tssr61669	transcription start site region 61669	1175 bp downstream