rs36630564 SNP Detail

Summary

• ID
  rs36630564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19278026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTTCT CCTACTCACG
  GAGCCTCCGA CCCTGCCGGA GCTCTAGAAT GCACTGGAGT TTAAAGACAA TCTCCCTTTA
  CAGATTCACC CTCATCAGGT TTAATAACTT CCACCCCAAA TTACCCCAAC CCTCCTCATT
  CCCTCCTGTC ATTTATTTTC TGCCCCAGGG GCCAAGATCT TCTTCAGTGC CTCCCTACTG
  R
  CTCCAGGGAA CCCTCCGAGA ACCCAGAAAG GGTGGAAAGA TGGGGAGGAG AGGGAGCTAG
  TGAATATAGA ATTCCTCATG AAATTAAAAA AAAGAAAATC CTGTGCCTTA CAGGGTGCCC
  ACTTGAGGGT AGGTTAGTGG TTAAACTTTG TACTTGTTGT TATTTATGCT TTGAAAATAT
  TTTTTAAAAA ACTAAACTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916984	NES13479830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36630564					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916984	NES13479830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19278026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	1879 bp proximal
Rr408233	regulatory region 408233	1647 bp distal
Rr408235	regulatory region 408235	1278 bp distal
Rr408236	regulatory region 408236	1408 bp distal
Rr408237	regulatory region 408237	within coordinates
Rr408238	regulatory region 408238	951 bp proximal
Rr408239	regulatory region 408239	1169 bp proximal
Tfap2b	transcription factor AP-2 beta	1112 bp upstream
Tssr6030	transcription start site region 6030	1138 bp upstream
Tssr6031	transcription start site region 6031	1181 bp upstream
Tssr6032	transcription start site region 6032	1196 bp upstream
Tssr6033	transcription start site region 6033	1212 bp upstream
Tssr6034	transcription start site region 6034	1236 bp upstream
Tssr6035	transcription start site region 6035	1268 bp upstream
Tssr6036	transcription start site region 6036	1292 bp upstream
Tssr6037	transcription start site region 6037	1310 bp upstream
Tssr6038	transcription start site region 6038	1338 bp upstream
Tssr6039	transcription start site region 6039	1353 bp upstream