rs3663069 SNP Detail

Summary

• ID
  rs3663069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44588758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTAGTG GAAGTCTAAG
  TAACACTGGA TTTAAAGACC TAGGAATTAG TGTTTGATTC AGCTGGGGTT AGGGTTAAGT
  GGTATTGGGC AGTTCTTGGT ATTGCATGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGCG CACATGCCTA TGCCTATAGG CACACAGATG GGGTTGTGTG TGTGTATACA
  Y
  TTGTGCTTGC TTGGATGGAA GTGTGTACTG ATAGCCCCAT CATCTGTCAG AGTTACTTGA
  GTTCTTCTGT TTAGAACTCT GTAGAATGTG GGAAACGACT TATGGGCTGT TTGTAAGAAT
  TCTGAAACCC AGCAAGTTAA GAAATGAGCA ATTTCTCATC ATAAACACAC GTCATTAGTC
  TTTGATTTCA TTTATTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5039004	WI_WGS_11_45067902	WI	MOUSE	f	SNP					T			C
ss37125902	NES08330344	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		C		C	C	C	C	C	C
ss132083695	ENSMUSSNP4515386	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3663069					SNP	T	T	T	C	T	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37125902	NES08330344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44588758 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445670	regulatory region 445670	414 bp distal
Tssr101056	transcription start site region 101056	1095 bp upstream