rs3663080 SNP Detail

Summary

• ID
  rs3663080
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71856559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT ACCTGAGCTA CATCTTCATC
  M
  CCTAGACAAG GCTGTACTTT GATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5039015	WI_WGS_2_72852520	WI	MOUSE	f	SNP		A	C
ss45381036	mCV24291029	ABI	CRAMUS_MOUSE	f	SNP	A		C	C
ss146754802	ENSMUSSNP3723065	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3663080					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71856559 () rs orientation: forward

Symbol	Name	Function Class
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4	within coordinates
Rr54771	regulatory region 54771	1990 bp distal
Rr373343	regulatory region 373343	within coordinates