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rs36631699 SNP Detail
Summary
  • ID
    rs36631699
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44384586 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACCTTAGAT ATCAGGTCTC
AGTCACTTTT CATCACACAC TGGCTTCAGG AAGCAGACCC TCTTCCTGAA GTGAGGTCCA
TTAGCACTTG CCCATGTCTC TGGTGTTTTA ACAGATAAAA TGGGGAACTT CTTCCTTTCA
GCAGCACTGT ACCACTACCT GCCTGCATGG ATCAGCCAAA GCCACATTAC CTTGCAAAGC
R
CACAGGGAGA AGTGCATATG CTGTCTACTC CGACACACAC CGAGACAGAT CAACAACCAA
CCCTCGCATT CAGTGGTTAA CTCACTGAGA CAAAACAGCA CTTAGCTGAG CTGTTAACTC
ACAAACCAGA GAGACTTTCT GAACCGAGAT GTTGCTAGAG GGTCTACCAA GCTTTCCTGA
AATCACTGTG ACAGAGGCAC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50801822 NES13525191 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G G A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36631699 SNP G G G G G G G G G G G G G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50801822 NES13525191 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384586 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 1008 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 858 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 966 bp proximal
Rr548236 regulatory region 548236 1679 bp distal
Rr548237 regulatory region 548237 729 bp distal
Rr548238 regulatory region 548238 722 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 212 bp downstream
Tssr156606 transcription start site region 156606 261 bp upstream
Tssr156607 transcription start site region 156607 585 bp upstream
Tssr156608 transcription start site region 156608 994 bp upstream
Tssr156609 transcription start site region 156609 1204 bp upstream
Tssr159446 transcription start site region 159446 1554 bp upstream
Tssr159447 transcription start site region 159447 1379 bp upstream
Tssr159448 transcription start site region 159448 1353 bp upstream
Tssr159449 transcription start site region 159449 1290 bp upstream
Tssr159450 transcription start site region 159450 1276 bp upstream
Tssr159451 transcription start site region 159451 1196 bp upstream
Tssr159452 transcription start site region 159452 902 bp upstream
Tssr159453 transcription start site region 159453 833 bp upstream
Tssr159454 transcription start site region 159454 814 bp upstream
Tssr159455 transcription start site region 159455 508 bp upstream
Tssr159456 transcription start site region 159456 389 bp upstream
Tssr159457 transcription start site region 159457 360 bp upstream
Tssr159458 transcription start site region 159458 326 bp upstream
Tssr159459 transcription start site region 159459 234 bp upstream
Tssr159460 transcription start site region 159460 198 bp upstream
Tssr159461 transcription start site region 159461 137 bp upstream
Tssr159462 transcription start site region 159462 105 bp upstream
Tssr159463 transcription start site region 159463 66 bp upstream
Tssr159464 transcription start site region 159464 36 bp upstream
Tssr159465 transcription start site region 159465 16 bp upstream
Tssr159466 transcription start site region 159466 within coordinates
Tssr159467 transcription start site region 159467 46 bp downstream
Tssr159468 transcription start site region 159468 294 bp downstream
Tssr159469 transcription start site region 159469 364 bp downstream
Tssr159470 transcription start site region 159470 381 bp downstream
Tssr159471 transcription start site region 159471 398 bp downstream
Tssr159472 transcription start site region 159472 434 bp downstream
Tssr159473 transcription start site region 159473 453 bp downstream
Tssr159474 transcription start site region 159474 478 bp downstream
Tssr159475 transcription start site region 159475 523 bp downstream
Tssr159476 transcription start site region 159476 541 bp downstream
Tssr159477 transcription start site region 159477 561 bp downstream
Tssr159478 transcription start site region 159478 571 bp downstream
Tssr159479 transcription start site region 159479 595 bp downstream
Tssr159480 transcription start site region 159480 623 bp downstream
Tssr159481 transcription start site region 159481 672 bp downstream
Tssr159482 transcription start site region 159482 772 bp downstream
Tssr159483 transcription start site region 159483 863 bp downstream
Tssr159484 transcription start site region 159484 897 bp downstream
Tssr159485 transcription start site region 159485 1023 bp downstream
Tssr159486 transcription start site region 159486 1030 bp downstream
Tssr159487 transcription start site region 159487 1111 bp downstream
Tssr159488 transcription start site region 159488 1128 bp downstream
Tssr159489 transcription start site region 159489 1182 bp downstream
Tssr159490 transcription start site region 159490 1284 bp downstream
Tssr159491 transcription start site region 159491 1319 bp downstream
Tssr159492 transcription start site region 159492 1370 bp downstream
Tssr159493 transcription start site region 159493 1396 bp downstream
Tssr159494 transcription start site region 159494 1416 bp downstream
Tssr159495 transcription start site region 159495 1534 bp downstream
Tssr159496 transcription start site region 159496 1604 bp downstream
Tssr159497 transcription start site region 159497 1617 bp downstream
Tssr159498 transcription start site region 159498 1629 bp downstream
Tssr159499 transcription start site region 159499 1659 bp downstream
Tssr159500 transcription start site region 159500 1690 bp downstream
Tssr159501 transcription start site region 159501 1705 bp downstream
Tssr159502 transcription start site region 159502 1741 bp downstream
Tssr159503 transcription start site region 159503 1754 bp downstream
Tssr159504 transcription start site region 159504 1833 bp downstream
Tssr159505 transcription start site region 159505 1946 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory