rs36633809 SNP Detail

Summary

• ID
  rs36633809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69468531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACAGTAGT GGTATAAAAA
  TCCATGTCGT AAGTATGTCA GTCTGTTTGG GACAGGGTCA CCGTATCCCT GAGGAATCAC
  GTGGTTAATC TCATATCACC TAAAGCCTAG GTAGGTTCTT TTAGTTGCAT GTGAACTATG
  GACAGTCATT TCAAGACAGA GGAAGAATTC ATAGAAAGAC AAGTCCGTGA ATACCAGTCA
  W
  AGGACTTAGC AATACAGTCT GCAGCTCATG ATTCAACTGT CACCTACACC ACTAAACTTG
  GAGGCTTTTC TTAAGCTTTA CCATGCTAGC ATTTCCTCTT TATCGCAAAG CTTAAGCCAG
  CCCTCTGAAA TGAATATCTA AAGGCTAAAA GAAGTAGCAT GTAGACGCTT TGGGGGTACA
  TGTTCCCCCA ACTACATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51265556	NES14271271	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36633809					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51265556	NES14271271	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69468531 () rs orientation: forward

Symbol	Name	Function Class
Gm28497	predicted gene 28497	1854 bp upstream
Gm69966	predicted gene, 69966	384 bp downstream