rs36634885 SNP Detail

Summary

• ID
  rs36634885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10183449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTGCTTA CCCTGGAATG CGTGTTACAG TGACCAAAGC
  CCAAGAGAGA CCTTGCCTCA AGCATGGCAG AAGGCGTCTC TCAGAAAGTT GTCCTCTAAC
  R
  TCTAAGAAAG GAGATGAGGA GTGACCTGCA AAATGGCAGG TAAATGCAAT GCACCTACTT
  TCAAGCCTGG TGACTTGGGG TCAGTCCCCA GGACCCACAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50603778	NES13643280	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36634885					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50603778	NES13643280	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10183449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1612 bp distal
Fen1	flap structure specific endonuclease 1	1916 bp upstream
Rr356596	regulatory region 356596	352 bp proximal
Rr361277	regulatory region 361277	1396 bp proximal
Rr362959	regulatory region 362959	648 bp distal
Rr405855	regulatory region 405855	1730 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155037	transcription start site region 155037	1894 bp downstream
Tssr155038	transcription start site region 155038	1848 bp downstream
Tssr155039	transcription start site region 155039	1836 bp downstream
Tssr155040	transcription start site region 155040	375 bp upstream
Tssr158167	transcription start site region 158167	1672 bp upstream